From 5603f6eb14fc7ad5bbd35f2f3d44104b3a8a679f Mon Sep 17 00:00:00 2001 From: bbimber Date: Fri, 8 May 2026 15:18:51 -0700 Subject: [PATCH] Update packages --- jbrowse/package-lock.json | 99 ++++++++++++++++++++++----------------- jbrowse/package.json | 10 ++-- 2 files changed, 60 insertions(+), 49 deletions(-) diff --git a/jbrowse/package-lock.json b/jbrowse/package-lock.json index 2b41a34dc..29c464c18 100644 --- a/jbrowse/package-lock.json +++ b/jbrowse/package-lock.json @@ -17,18 +17,18 @@ "@jbrowse/plugin-variants": "^4.1.13", "@jbrowse/product-core": "^4.1.13", "@jbrowse/react-linear-genome-view2": "^4.1.13", - "@labkey/api": "^1.39.0", - "@labkey/components": "^7.16.0", + "@labkey/api": "^1.51.0", + "@labkey/components": "^7.35.0", "@mui/x-data-grid": "^7.28.1", "assert": "^2.1.0", "browserify-zlib": "^0.2.0", "buffer": "^6.0.3", "child_process": "^1.0.2", - "fs": "^0.0.1-security", + "fs": "^0.0.2", "jquery": "^3.7.1", "jspdf": "^4.2.1", "jspdf-autotable": "^5.0.7", - "node-polyfill-webpack-plugin": "4.1.0", + "node-polyfill-webpack-plugin": "^4.1.0", "path-browserify": "^1.0.1", "react": "^18.3.0", "react-data-grid": "7.0.0-beta.46", @@ -38,7 +38,7 @@ "regenerator-runtime": "^0.14.1", "stream-browserify": "^3.0.0", "util": "^0.12.5", - "uuid": "^11.1.0", + "uuid": "^14.0.0", "vm-browserify": "^1.1.2" }, "devDependencies": { @@ -1016,11 +1016,10 @@ } }, "node_modules/@babel/plugin-transform-modules-systemjs": { - "version": "7.29.0", - "resolved": "https://registry.npmjs.org/@babel/plugin-transform-modules-systemjs/-/plugin-transform-modules-systemjs-7.29.0.tgz", - "integrity": "sha512-PrujnVFbOdUpw4UHiVwKvKRLMMic8+eC0CuNlxjsyZUiBjhFdPsewdXCkveh2KqBA9/waD0W1b4hXSOBQJezpQ==", + "version": "7.29.4", + "resolved": "https://registry.npmjs.org/@babel/plugin-transform-modules-systemjs/-/plugin-transform-modules-systemjs-7.29.4.tgz", + "integrity": "sha512-N7QmZ0xRZfjHOfZeQLJjwgX2zS9pdGHSVl/cjSGlo4dXMqvurfxXDMKY4RqEKzPozV78VMcd0lxyG13mlbKc4w==", "dev": true, - "license": "MIT", "dependencies": { "@babel/helper-module-transforms": "^7.28.6", "@babel/helper-plugin-utils": "^7.28.6", @@ -3604,9 +3603,9 @@ } }, "node_modules/@labkey/api": { - "version": "1.51.0", - "resolved": "https://labkey.jfrog.io/artifactory/api/npm/libs-client/@labkey/api/-/@labkey/api-1.51.0.tgz", - "integrity": "sha512-pyYXCNbFF3HZQ8KVapcwBl/7cHlVDz0ysPlCRBUQ9czX6s2yLwiho0OWkBd9MpbGVkqGFihbTUsUAU+Y5rz5Pw==" + "version": "1.51.1", + "resolved": "https://labkey.jfrog.io/artifactory/api/npm/libs-client/@labkey/api/-/@labkey/api-1.51.1.tgz", + "integrity": "sha512-RORsQpToUXkGsZMqMfqW+5d8g3r09s2Pojjz4z66hZR3nXw6K6U7xaXih/+96vFwbJ7BeqUsbv71+5dxX6Bmfg==" }, "node_modules/@labkey/build": { "version": "9.1.0", @@ -3646,12 +3645,12 @@ } }, "node_modules/@labkey/components": { - "version": "7.28.1", - "resolved": "https://labkey.jfrog.io/artifactory/api/npm/libs-client/@labkey/components/-/@labkey/components-7.28.1.tgz", - "integrity": "sha512-hrSs8iHM2XTpB4vyzerjYVdi0aoE4VUSMusYCNB1SFXcXFR3rExZsZR6aPjkC09Ge+eequOVsHXfM//not+KQA==", + "version": "7.35.1", + "resolved": "https://labkey.jfrog.io/artifactory/api/npm/libs-client/@labkey/components/-/@labkey/components-7.35.1.tgz", + "integrity": "sha512-vsus4L0ocU89Dgb2O585TaHrtpKv9qKWgakVCkj+nlq/Os3A9a9vVXKnnlGh1QmYiPKzjyGtbImokkS5hjO8Yg==", "dependencies": { "@hello-pangea/dnd": "18.0.1", - "@labkey/api": "1.51.0", + "@labkey/api": "1.51.1", "@testing-library/dom": "~10.4.1", "@testing-library/jest-dom": "~6.9.1", "@testing-library/react": "~16.3.2", @@ -7190,10 +7189,9 @@ } }, "node_modules/dompurify": { - "version": "3.3.3", - "resolved": "https://registry.npmjs.org/dompurify/-/dompurify-3.3.3.tgz", - "integrity": "sha512-Oj6pzI2+RqBfFG+qOaOLbFXLQ90ARpcGG6UePL82bJLtdsa6CYJD7nmiU8MW9nQNOtCHV3lZ/Bzq1X0QYbBZCA==", - "license": "(MPL-2.0 OR Apache-2.0)", + "version": "3.4.2", + "resolved": "https://registry.npmjs.org/dompurify/-/dompurify-3.4.2.tgz", + "integrity": "sha512-lHeS9SA/IKeIFFyYciHBr2n0v1VMPlSj843HdLOwjb2OxNwdq9Xykxqhk+FE42MzAdHvInbAolSE4mhahPpjXA==", "optionalDependencies": { "@types/trusted-types": "^2.0.7" } @@ -7573,8 +7571,19 @@ "license": "(MIT AND Zlib)" }, "node_modules/fast-uri": { - "version": "3.0.1", - "license": "MIT" + "version": "3.1.2", + "resolved": "https://registry.npmjs.org/fast-uri/-/fast-uri-3.1.2.tgz", + "integrity": "sha512-rVjf7ArG3LTk+FS6Yw81V1DLuZl1bRbNrev6Tmd/9RaroeeRRJhAt7jg/6YFxbvAQXUCavSoZhPPj6oOx+5KjQ==", + "funding": [ + { + "type": "github", + "url": "https://github.com/sponsors/fastify" + }, + { + "type": "opencollective", + "url": "https://opencollective.com/fastify" + } + ] }, "node_modules/fastest-levenshtein": { "version": "1.0.16", @@ -7918,8 +7927,9 @@ } }, "node_modules/fs": { - "version": "0.0.1-security", - "license": "ISC" + "version": "0.0.2", + "resolved": "https://registry.npmjs.org/fs/-/fs-0.0.2.tgz", + "integrity": "sha512-YAiVokMCrSIFZiroB1oz51hPiPRVcUtSa4x2U5RYXyhS9VAPdiFigKbPTnOSq7XY8wd3FIVPYmXpo5lMzFmxgg==" }, "node_modules/fs-extra": { "version": "11.3.1", @@ -9466,9 +9476,9 @@ } }, "node_modules/nanoid": { - "version": "3.3.8", - "resolved": "https://registry.npmjs.org/nanoid/-/nanoid-3.3.8.tgz", - "integrity": "sha512-WNLf5Sd8oZxOm+TzppcYk8gVOgP+l58xNy58D0nbUnOxOWRWvlcCV4kUF7ltmI6PsrLl/BgKEyS4mqsGChFN0w==", + "version": "3.3.12", + "resolved": "https://registry.npmjs.org/nanoid/-/nanoid-3.3.12.tgz", + "integrity": "sha512-ZB9RH/39qpq5Vu6Y+NmUaFhQR6pp+M2Xt76XBnEwDaGcVAqhlvxrl3B2bKS5D3NH3QR76v3aSrKaF/Kiy7lEtQ==", "dev": true, "funding": [ { @@ -10264,7 +10274,9 @@ } }, "node_modules/postcss": { - "version": "8.4.40", + "version": "8.5.14", + "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.5.14.tgz", + "integrity": "sha512-SoSL4+OSEtR99LHFZQiJLkT59C5B1amGO1NzTwj7TT1qCUgUO6hxOvzkOYxD+vMrXBM3XJIKzokoERdqQq/Zmg==", "dev": true, "funding": [ { @@ -10280,11 +10292,10 @@ "url": "https://github.com/sponsors/ai" } ], - "license": "MIT", "dependencies": { - "nanoid": "^3.3.7", - "picocolors": "^1.0.1", - "source-map-js": "^1.2.0" + "nanoid": "^3.3.11", + "picocolors": "^1.1.1", + "source-map-js": "^1.2.1" }, "engines": { "node": "^10 || ^12 || >=14" @@ -12591,15 +12602,15 @@ } }, "node_modules/uuid": { - "version": "11.1.0", - "resolved": "https://registry.npmjs.org/uuid/-/uuid-11.1.0.tgz", - "integrity": "sha512-0/A9rDy9P7cJ+8w1c9WD9V//9Wj15Ce2MPz8Ri6032usz+NfePxx5AcN3bN+r6ZL6jEo066/yNYB3tn4pQEx+A==", + "version": "14.0.0", + "resolved": "https://registry.npmjs.org/uuid/-/uuid-14.0.0.tgz", + "integrity": "sha512-Qo+uWgilfSmAhXCMav1uYFynlQO7fMFiMVZsQqZRMIXp0O7rR7qjkj+cPvBHLgBqi960QCoo/PH2/6ZtVqKvrg==", "funding": [ "https://github.com/sponsors/broofa", "https://github.com/sponsors/ctavan" ], "bin": { - "uuid": "dist/esm/bin/uuid" + "uuid": "dist-node/bin/uuid" } }, "node_modules/vary": { @@ -12618,22 +12629,22 @@ "integrity": "sha512-m6EXlCAMetKztO1ppBhGU1/1MR3IiEevO6ESq6rcrSQ3Q77xYSW13jkfXW88o4xMrkXJhy/U7j4wFR/twMB0Eg==" }, "node_modules/vis-data": { - "version": "8.0.3", - "resolved": "https://registry.npmjs.org/vis-data/-/vis-data-8.0.3.tgz", - "integrity": "sha512-jhnb6rJNqkKR1Qmlay0VuDXY9ZlvAnYN1udsrP4U+krgZEq7C0yNSKdZqmnCe13mdnf9AdVcdDGFOzy2mpPoqw==", + "version": "8.0.4", + "resolved": "https://registry.npmjs.org/vis-data/-/vis-data-8.0.4.tgz", + "integrity": "sha512-TsN0sMHqIRpdfg6TNPtfdINpkgxtnQP6JNWCaiSwvou5seXqKiP5eERkaBg+Y56wyJ4FZTeOEs/dEmWEPrpltQ==", "funding": { "type": "opencollective", "url": "https://opencollective.com/visjs" }, "peerDependencies": { - "uuid": "^3.4.0 || ^7.0.0 || ^8.0.0 || ^9.0.0 || ^10.0.0 || ^11.0.0 || ^13.0.0", + "uuid": "^3.4.0 || ^7.0.0 || ^8.0.0 || ^9.0.0 || ^10.0.0 || ^11.0.0 || ^13.0.0 || ^14.0.0", "vis-util": ">=6.0.0" } }, "node_modules/vis-network": { - "version": "10.0.2", - "resolved": "https://registry.npmjs.org/vis-network/-/vis-network-10.0.2.tgz", - "integrity": "sha512-qPl8GLYBeHEFqiTqp4VBbYQIJ2EA8KLr7TstA2E8nJxfEHaKCU81hQLz7hhq11NUpHbMaRzBjW5uZpVKJ45/wA==", + "version": "10.0.3", + "resolved": "https://registry.npmjs.org/vis-network/-/vis-network-10.0.3.tgz", + "integrity": "sha512-Sk8qoyY4oi8o5dh8bHsKTTtHi8wWZABbLpH0Ac95ULqVuBIFbMng95QJmEKP8kIQlkjbq3ChJrk1bPmig9Cxig==", "funding": { "type": "opencollective", "url": "https://opencollective.com/visjs" @@ -12642,7 +12653,7 @@ "@egjs/hammerjs": "^2.0.0", "component-emitter": "^1.3.0 || ^2.0.0", "keycharm": "^0.2.0 || ^0.3.0 || ^0.4.0", - "uuid": "^3.4.0 || ^7.0.0 || ^8.0.0 || ^9.0.0 || ^10.0.0 || ^11.0.0 || ^13.0.0", + "uuid": "^3.4.0 || ^7.0.0 || ^8.0.0 || ^9.0.0 || ^10.0.0 || ^11.0.0 || ^13.0.0 || ^14.0.0", "vis-data": ">=8.0.0", "vis-util": ">=6.0.0" } diff --git a/jbrowse/package.json b/jbrowse/package.json index 843630364..31c0c43e2 100644 --- a/jbrowse/package.json +++ b/jbrowse/package.json @@ -23,18 +23,18 @@ "@jbrowse/plugin-variants": "^4.1.13", "@jbrowse/product-core": "^4.1.13", "@jbrowse/react-linear-genome-view2": "^4.1.13", - "@labkey/api": "^1.39.0", - "@labkey/components": "^7.16.0", + "@labkey/api": "^1.51.0", + "@labkey/components": "^7.35.0", "@mui/x-data-grid": "^7.28.1", "assert": "^2.1.0", "browserify-zlib": "^0.2.0", "buffer": "^6.0.3", "child_process": "^1.0.2", - "fs": "^0.0.1-security", + "fs": "^0.0.2", "jquery": "^3.7.1", "jspdf": "^4.2.1", "jspdf-autotable": "^5.0.7", - "node-polyfill-webpack-plugin": "4.1.0", + "node-polyfill-webpack-plugin": "^4.1.0", "path-browserify": "^1.0.1", "react": "^18.3.0", "react-data-grid": "7.0.0-beta.46", @@ -44,7 +44,7 @@ "regenerator-runtime": "^0.14.1", "stream-browserify": "^3.0.0", "util": "^0.12.5", - "uuid": "^11.1.0", + "uuid": "^14.0.0", "vm-browserify": "^1.1.2" }, "devDependencies": {