From 37ff96e70baa70adc197d911f6b747322d072226 Mon Sep 17 00:00:00 2001
From: Christos Longros <chris.longros@gmail.com>
Date: Mon, 11 May 2026 09:59:50 +0200
Subject: [PATCH] r-cmprsk: add Subdistribution Analysis of Competing Risks

Estimation, testing and regression modeling of subdistribution
functions in competing risks, as described in Gray (1988), A class
of K-sample tests for comparing the cumulative incidence of a
competing risk, Annals of Statistics 16:1141-1154, and Fine JP and
Gray RJ (1999), A proportional hazards model for the subdistribution
of a competing risk, JASA 94:496-509.

Signed-off-by: Christos Longros <chris.longros@gmail.com>
---
 BioArchLinux/r-cmprsk/PKGBUILD   | 26 ++++++++++++++++++++++++++
 BioArchLinux/r-cmprsk/lilac.py   | 11 +++++++++++
 BioArchLinux/r-cmprsk/lilac.yaml | 10 ++++++++++
 3 files changed, 47 insertions(+)
 create mode 100644 BioArchLinux/r-cmprsk/PKGBUILD
 create mode 100644 BioArchLinux/r-cmprsk/lilac.py
 create mode 100644 BioArchLinux/r-cmprsk/lilac.yaml

diff --git a/BioArchLinux/r-cmprsk/PKGBUILD b/BioArchLinux/r-cmprsk/PKGBUILD
new file mode 100644
index 0000000000..5bbdb5f8ad
--- /dev/null
+++ b/BioArchLinux/r-cmprsk/PKGBUILD
@@ -0,0 +1,26 @@
+# Maintainer: Christos Longros <chris.longros@gmail.com>
+_pkgname=cmprsk
+_pkgver=2.2-12
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Subdistribution Analysis of Competing Risks"
+arch=(any)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-2.0-or-later')
+depends=(
+  r
+)
+makedepends=(
+  gcc-fortran
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('ae85888a4daf6417d48fc35cb306e909')
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-cmprsk/lilac.py b/BioArchLinux/r-cmprsk/lilac.py
new file mode 100644
index 0000000000..e954aae0d3
--- /dev/null
+++ b/BioArchLinux/r-cmprsk/lilac.py
@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+from lilaclib import *
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+def pre_build():
+    r_pre_build(_G)
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-cmprsk/lilac.yaml b/BioArchLinux/r-cmprsk/lilac.yaml
new file mode 100644
index 0000000000..50759af98b
--- /dev/null
+++ b/BioArchLinux/r-cmprsk/lilac.yaml
@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: chrislongros
+  email: chris.longros@gmail.com
+update_on:
+- source: rpkgs
+  pkgname: cmprsk
+  repo: cran
+  md5: true
+- alias: r