Skip to content

package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment'  #68

@bakaufman

Description

@bakaufman

I get the error:
Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Warning message:
package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment'

Using force = TRUE doesn't help.

sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6.2

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] Biobase_2.58.0 MatrixGenerics_1.10.0 matrixStats_0.63.0 Rsamtools_2.14.0 GenomicRanges_1.50.2 BiocParallel_1.32.5
[7] BiocManager_1.30.19 Biostrings_2.66.0 GenomeInfoDb_1.34.6 XVector_0.38.0 IRanges_2.32.0 S4Vectors_0.36.1
[13] BiocGenerics_0.44.0

loaded via a namespace (and not attached):
[1] zlibbioc_1.44.0 lattice_0.20-45 tools_4.2.2 parallel_4.2.2 grid_4.2.2 crayon_1.5.2
[7] Matrix_1.5-3 GenomeInfoDbData_1.2.9 bitops_1.0-7 codetools_0.2-18 RCurl_1.98-1.9 compiler_4.2.2

valid()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
CRAN: https://cran.rstudio.com/

[1] TRUE

Not sure what recommended next steps are. I am still pretty new to this.

Thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions