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update code guidance page
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README.md

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PyTorch implementation of [PerturbDiff], a functional diffusion-based framework for single-cell perturbation modeling. Code authored by [Xinyu Yuan], [Xixian Liu], and [Yashi Zhang]; Code released by [Xinyu Yuan] and [Codex]; project supervised by [Jian Tang].
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## Project Page
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See our official [project page](https://katarinayuan.github.io/PerturbDiff-ProjectPage/) and our [interactive code guidance page](https://deepgraphlearning.github.io/PerturbDiff/).
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For a concise visual introduction to the method, results, and resources, visit the official project page:
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[https://katarinayuan.github.io/PerturbDiff-ProjectPage/](https://katarinayuan.github.io/PerturbDiff-ProjectPage/)
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[Xinyu Yuan]: https://github.com/KatarinaYuan
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[Xixian Liu]: https://github.com/ZeroKnighting
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## File Structure
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```text
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PerturbDiff-Refactor/
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├── README.md
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├── src/
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│ ├── apps/
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│ │ ├── run/
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│ │ │ ├── rawdata_diffusion_training.py
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│ │ │ └── rawdata_diffusion_sampling.py
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│ │ ├── training/
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│ │ └── sampling/
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│ ├── models/
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│ │ ├── diffusion/
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│ │ ├── cross_dit/
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│ │ └── lightning/
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│ ├── data/
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│ │ ├── data_module/
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│ │ └── dataset/
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│ ├── common/
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│ └── tools/
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├── configs/
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│ ├── rawdata_diffusion_training.yaml
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│ ├── rawdata_diffusion_sampling.yaml
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│ ├── data/
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│ │ ├── pbmc_finetune.yaml
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│ │ ├── tahoe100m_finetune.yaml
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│ │ ├── replogle_finetune.yaml
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│ │ ├── tahoe100m_pbmc_replogle_pretrain_cellxgene.yaml
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│ │ ├── perturb_data/
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│ │ └── rna_data/
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│ ├── model/
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│ ├── trainer/
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│ ├── lightning/
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│ ├── optimization/
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│ ├── path/
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│ └── cov_encoding/
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└── src/
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```
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### Detailed `src/` Module Map
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```text
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src/
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├── apps/

index.html

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<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin />
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<link href="https://fonts.googleapis.com/css2?family=Manrope:wght@400;600;700;800&family=JetBrains+Mono:wght@400;600&display=swap" rel="stylesheet" />
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<style>
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html, body { height: 100%; overflow: hidden; }
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html, body { min-height: 100%; overflow: auto; }
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:root {
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--bg: #f3efe6;
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--bg2: #ece3cf;
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linear-gradient(145deg, var(--bg), var(--bg2));
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}
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.app {
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height: 100dvh;
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min-height: 100dvh;
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height: auto;
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display: grid;
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grid-template-rows: auto auto 1fr;
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gap: var(--gap);
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.splitter { display: none; }
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.h-splitter { display: none; }
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.steps { grid-template-columns: repeat(2, minmax(0, 1fr)); }
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html, body { overflow: auto; }
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.app { height: auto; min-height: 100dvh; }
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.app { min-height: 100dvh; }
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.panel { min-height: 280px; }
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}
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