fix : same name bug fixed

Author: sepandhaghighi

csv2vcf/VCF.py

@@ -80,6 +80,7 @@ def csv_reader(file_name):
         file=open(file_name,"r")
         unknown_index=0
         vcf_counter=0
+        name_dict={}
         foldername=VCF_Folder(file_name)
         for index,line in enumerate(file):
             if index>0:
@@ -89,11 +90,19 @@ def csv_reader(file_name):
                     print("[Warning] CSV File Line "+str(index)+" Bad Format")
                     continue
                 else:
+                    name=temp[0]+","+temp[1]
+                    if name not in name_dict.keys():
+                        name_dict[name]=0
+                    else:
+                        name_dict[name]=name_dict[name]+1
                     if len(temp[0])==0 and len(temp[1])==0:
                         unknown_index+=1
                         VCF_creator(foldername,"Unknown ",str(unknown_index),temp[2],temp[3],temp[4],temp[5],temp[6],temp[7],temp[8],temp[9],temp[10])
                     else:
-                        VCF_creator(foldername,temp[0],temp[1],temp[2],temp[3],temp[4],temp[5],temp[6],temp[7],temp[8],temp[9],temp[10])
+                        if name_dict[name]!=0:
+                            VCF_creator(foldername,temp[0]+"_"+str(name_dict[name]),temp[1],temp[2],temp[3],temp[4],temp[5],temp[6],temp[7],temp[8],temp[9],temp[10])
+                        else:
+                            VCF_creator(foldername, temp[0], temp[1], temp[2], temp[3],temp[4], temp[5], temp[6], temp[7], temp[8], temp[9], temp[10])
                     vcf_counter+=1
         return vcf_counter