Skip to content

Commit ed45001

Browse files
FFroehlichdweindl
authored andcommitted
Update tutorial.rst
1 parent 8681ebf commit ed45001

1 file changed

Lines changed: 6 additions & 6 deletions

File tree

doc/tutorial.rst

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -120,7 +120,7 @@ overridden by these condition-specific values. Here, we define the Epo
120120
concentration, but additional columns could be used to e.g. set
121121
different initial concentrations of STAT5A/B. In addition to numeric
122122
values, also parameter identifiers can be used here to introduce
123-
condition specific optimization parameters.
123+
condition specific estimateable parameters.
124124

125125
2.2 Specifying the observation model
126126
------------------------------------
@@ -273,17 +273,17 @@ The parameters file for this is given by:
273273
observables (*sd_{observableId}*) are estimated.
274274

275275
* *parameterScale* is the scale on which parameters are estimated. Often,
276-
a logarithmic scale improves optimization. Alternatively, a linear scale
276+
a logarithmic scale improves estimation. Alternatively, a linear scale
277277
can be used, e.g. when parameters can be negative.
278278

279279
* *lowerBound* and *upperBound* define the bounds for the parameters used
280-
during optimization. These are usually biologically plausible ranges.
280+
during estimation. These are usually biologically plausible ranges.
281281

282282
* *nominalValue* are known values used for simulation. The entry can be
283-
left empty, if a value is unknown and subject to optimization.
283+
left empty, if a value is unknown and requires estimation.
284284

285-
* *estimate* defines whether the parameter is subject to optimization (1)
286-
or if it is fixed (0) to the value in the nominalValue column.
285+
* *estimate* defines whether the parameter will be estimated (1)
286+
or be fixed (0) to the value in the nominalValue column.
287287

288288
4. Visualization file
289289
+++++++++++++++++++++

0 commit comments

Comments
 (0)