spotless

Author: haileyajohnson

cdm/core/src/main/java/ucar/nc2/iosp/IospHelper.java

@@ -306,6 +306,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         ByteBuffer bb = chunk.getByteBuffer();
+        // if chunk is empty, use fill value
         if (!bb.hasRemaining()) {
           continue;
         }
@@ -327,6 +328,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         ShortBuffer buff = chunk.getShortBuffer();
+        // if chunk is empty, use fill value
         if (!buff.hasRemaining()) {
           continue;
         }
@@ -342,6 +344,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         IntBuffer buff = chunk.getIntBuffer();
+        // if chunk is empty, use fill value
         if (!buff.hasRemaining()) {
           continue;
         }
@@ -357,6 +360,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         FloatBuffer buff = chunk.getFloatBuffer();
+        // if chunk is empty, use fill value
         if (!buff.hasRemaining()) {
           continue;
         }
@@ -372,6 +376,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         DoubleBuffer buff = chunk.getDoubleBuffer();
+        // if chunk is empty, use fill value
         if (!buff.hasRemaining()) {
           continue;
         }
@@ -387,6 +392,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         LongBuffer buff = chunk.getLongBuffer();
+        // if chunk is empty, use fill value
         if (!buff.hasRemaining()) {
           continue;
         }
@@ -403,6 +409,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         ByteBuffer bb = chunk.getByteBuffer();
+        // if chunk is empty, use fill value
         if (!bb.hasRemaining()) {
           continue;
         }
@@ -418,6 +425,7 @@ public static Object readData(LayoutBB layout, DataType dataType, Object arr) {
       while (layout.hasNext()) {
         LayoutBB.Chunk chunk = layout.next();
         ByteBuffer bb = chunk.getByteBuffer();
+        // if chunk is empty, use fill value
         if (!bb.hasRemaining()) {
           continue;
         }
@@ -804,7 +812,6 @@ public static byte[] convertCharToByteUTF(char[] from) {
   }
 
   // convert byte array to char array
-
   public static char[] convertByteToChar(byte[] byteArray) {
     int size = byteArray.length;
     char[] cbuff = new char[size];
@@ -814,7 +821,6 @@ public static char[] convertByteToChar(byte[] byteArray) {
   }
 
   // convert char array to byte array
-
   public static byte[] convertCharToByte(char[] from) {
     byte[] to = null;
     if (from != null) {
@@ -826,6 +832,7 @@ public static byte[] convertCharToByte(char[] from) {
     return to;
   }
 
+  // convert byte array to boolean array
   public static boolean[] convertByteToBoolean(byte[] from) {
     boolean[] to = null;
     if (from != null) {

cdm/core/src/main/java/ucar/nc2/iosp/hdf5/H5tiledLayoutBB.java

@@ -42,7 +42,6 @@ public class H5tiledLayoutBB implements LayoutBB {
   private H5header.Filter[] filters;
   private ByteOrder byteOrder;
 
-
   private Section want;
   private int[] chunkSize; // from the StorageLayout message (exclude the elemSize)
   private int elemSize; // last dimension of the StorageLayout message

cdm/zarr/src/main/java/ucar/nc2/iosp/zarr/ZarrFilter.java

@@ -5,16 +5,9 @@
 
 package ucar.nc2.iosp.zarr;
 
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.OutputStream;
-
 /**
  * To be implemented
  */
 public abstract class ZarrFilter {
 
-  public abstract String getId();
-
-  public abstract void compress(InputStream is, OutputStream os) throws IOException;
 }

cdm/zarr/src/main/java/ucar/nc2/iosp/zarr/ZarrUtils.java

@@ -10,8 +10,9 @@
 public class ZarrUtils {
   /**
    * Converts subscripted chunk number to a flat index
+   * 
    * @param subs - chunk index in each dimension
-   * @param nChunks  number of chunks per dimension
+   * @param nChunks number of chunks per dimension
    * @return chunk number as a flat index
    */
   public static int subscriptsToIndex(int[] subs, int[] nChunks) {
@@ -27,6 +28,7 @@ public static int subscriptsToIndex(int[] subs, int[] nChunks) {
   /**
    * Get name of an file within a Zarr object, i.e. name of file
    * e.g. 0.0.0 or, in the case of a nested store, 0/0/0
+   * 
    * @param filePath
    * @return data path relative to Zarr object
    */

cdm/zarr/src/test/java/ucar/nc2/iosp/zarr/TestZarrIosp.java

@@ -202,7 +202,6 @@ public void testReadUninitialized() throws IOException, InvalidRangeException {
     }
   }
 
-  // TODO: test values
   private void _testUninitialized(String location) throws IOException, InvalidRangeException {
     NetcdfFile ncfile = NetcdfFiles.open(location);