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3- [ Biojava] ( http://biojava.org ) and ADAM integration.
3+ [ Biojava] ( http://biojava.org ) and [ ADAM] ( https://github.com/bigdatagenomics/adam ) integration.
4+
5+ [ ![ Build Status] ( https://travis-ci.org/biojava/biojava-adam.svg?branch=master )] ( https://travis-ci.org/biojava/biojava-adam )
6+ [ ![ Maven Central] ( https://img.shields.io/maven-central/v/org.biojava/biojava-adam.svg?maxAge=600 )] ( http://search.maven.org/#search%7Cga%7C1%7Corg.biojava )
7+ [ ![ API Documentation] ( http://javadoc.io/badge/org.biojava/biojava-adam.svg?color=brightgreen&label=scaladoc )] ( http://javadoc.io/doc/org.biojava/biojava-adam )
8+
49
510### Hacking biojava-adam
611
@@ -24,7 +29,7 @@ To run interactively in `spark-shell`
2429$ spark-shell \
2530 --conf spark.serializer=org.apache.spark.serializer.KryoSerializer \
2631 --conf spark.kryo.registrator=org.biojava.nbio.adam.BiojavaKryoRegistrator \
27- --jars target/biojava-adam-5 .2.2 -SNAPSHOT.jar,$PATH_TO_ADAM_ASSEMBLY_JAR
32+ --jars target/biojava-adam-0 .2.0 -SNAPSHOT.jar,$PATH_TO_ADAM_ASSEMBLY_JAR
2833
2934Welcome to
3035 ____ __
@@ -108,7 +113,7 @@ $ INPUT=Homo_sapiens.GRCh38.96.chromosome.21.dat.gz \
108113 spark-shell \
109114 --conf spark.serializer=org.apache.spark.serializer.KryoSerializer \
110115 --conf spark.kryo.registrator=org.biojava.nbio.adam.BiojavaKryoRegistrator \
111- --jars target/biojava-adam-5 .2.2 -SNAPSHOT.jar,$PATH_TO_ADAM_ASSEMBLY_JAR
116+ --jars target/biojava-adam-0 .2.0 -SNAPSHOT.jar,$PATH_TO_ADAM_ASSEMBLY_JAR
112117 -i scripts/loadGenbankDna.scala
113118```
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