Some minor updates to dev docs

Author: tylercamp

IntelliJNotes.md

@@ -4,12 +4,12 @@ The following are some notes taken by a user who set up the plugin for developme
 
 * Import pom.xml using IntelliJ
 
-* Point IntelliJ to the Maven version installed to the Atlassian plugin SDK: File -> Settings -> Build, Execution, Deployment -> Build Tools -> Maven -> Maven home directory. Default installation of the plugin SDK is in C:\Applications\Atlassian
+* Point IntelliJ to the Maven version installed to the Atlassian plugin SDK: `File -> Settings -> Build, Execution, Deployment -> Build Tools -> Maven -> Maven home directory`. Default installation of the plugin SDK on Windows is in `C:\Applications\Atlassian`. Set this field to the `apache-maven-...` folder in the SDK folder. (If you run `atlas-build` or `atlas-run`, some of the logs will typically reference the install path.)
 
-* To run the built plugin in an instance of bamboo, run the bamboo:run maven task.
+* To run the built plugin in an instance of bamboo, run the `bamboo:run` maven task.
 
-* The plugin can be configured with QuickReload in the codedx-bamboo-plugin POM file. If this is set to true, a developer only needs to run bamboo:run, and then run atlas-mvn package in a seperate console session to build an updated version of the plugin, and have the Bamboo instance automatically reload the plugin.
+* The plugin can be configured with QuickReload in the codedx-bamboo-plugin POM file. If this is set to true, a developer only needs to run `bamboo:run`, and then run atlas-mvn package in a separate console session to build an updated version of the plugin, and have the Bamboo instance automatically reload the plugin.
 
 * When setting up bamboo, don't forget to configure your git install directory via the Server capabilities administration menu.
 
-* To debug in Intellij: run bamboo:debug, then go to Run->Attach to local process... and select the Catalina process.
+* To debug in Intellij: run `bamboo:debug`, then go to `Run->Attach to local process...` and select the Catalina process.

README.md

@@ -8,7 +8,7 @@ codedx-bamboo-plugin
  1. Install Atlassian Plugin SDK: (Windows url) - https://developer.atlassian.com/server/framework/atlassian-sdk/install-the-atlassian-sdk-on-a-windows-system/
  Additional information about the SDK can be found here - https://developer.atlassian.com/display/DOCS/Introduction+to+the+Atlassian+Plugin+SDK
 
- 2. For development, IntelliJ is recommended.  If stuck setting up IntelliJ, [some notes are included here](IntelliJNotes.md) from a user who set up the plugin for development in IntelliJ on Windows.
+ 2. For development, IntelliJ is recommended. See [the notes included here](IntelliJNotes.md) for detailed instructions on how to configure IntelliJ to load the project and resolve dependencies.
 
  3. If needed, update the Swagger client [following the instructions here](SwaggerSetup.md).  This shouldn't be needed but may be necessary if there is a version mismatch with the Code Dx server.
 
@@ -30,7 +30,7 @@ codedx-bamboo-plugin
 
 ### Running and Debugging from Command Line
 
- * The following commands can be used to run and debug the plugin from the root of this repository.  Only the run command was tested (briefly), and it didn't work consistently.
+ * The following commands can be used to run and debug the plugin from the root of this repository.  Only the run command was tested (briefly), and it didn't work consistently. (Normal `mvn` commands won't work, must use the `atlas-*` commands.)
 
  `atlas-run`
  `atlas-debug`