fixed some links

Author: sveinlin

doc/.src/chapters/advec/advec.do.txt

@@ -320,15 +320,15 @@ wave, and this main wave has the amplitude reduced.
 
 FIGURE: [fig-advec/gaussian_LF_C08, width=800 frac=1] Advection of a Gaussian function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$ (left) and $\Delta t=0.01$ (right). label{advec:1D:LF:fig1:C08}
 
-MOVIE: [mov-advec/gaussian/LF/C08_dt01.ogg] Advection of a Gaussian function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.01$. label{advec:1D:LF:mov1:C08:dt1}
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-advec/gaussian/LF/C08_dt01.ogg] Advection of a Gaussian function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.01$. label{advec:1D:LF:mov1:C08:dt1}
 
-MOVIE: [mov-advec/gaussian/LF/C08_dt001.ogg] Advection of a Gaussian function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$. label{advec:1D:LF:mov1:C08:dt2}
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-advec/gaussian/LF/C08_dt001.ogg] Advection of a Gaussian function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$. label{advec:1D:LF:mov1:C08:dt2}
 
 FIGURE: [fig-advec/cosinehat_LF_C08, width=800 frac=1] Advection of half a cosine function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$ (left) and $\Delta t=0.01$ (right). label{advec:1D:LF:fig2:C08}
 
-MOVIE: [mov-advec/cosinehat/UP/C08_dt01.ogg] Advection of half a cosine function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.01$. label{advec:1D:LF:mov2:C08:dt1}
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-advec/cosinehat/UP/C08_dt01.ogg] Advection of half a cosine function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.01$. label{advec:1D:LF:mov2:C08:dt1}
 
-MOVIE: [mov-advec/cosinehat/UP/C08_dt001.ogg] Advection of half a cosine function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$. label{advec:1D:LF:mov2:C08:dt2}
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-advec/cosinehat/UP/C08_dt001.ogg] Advection of half a cosine function with a leapfrog scheme and $C=0.8$, $\Delta t = 0.001$. label{advec:1D:LF:mov2:C08:dt2}
 
 
 === Analysis ===

doc/.src/chapters/diffu/diffu_fd1.do.txt

@@ -564,7 +564,7 @@ Terminal> python -c 'from diffu1D_u0 import gaussian
 The $u(x,t)$ curve as a function of $x$ is shown in Figure
 ref{diffu:pde1:FE:fig:F=0.5} at four time levels.
 
-MOVIE: [mov-diffu/diffu1D_u0_FE_plug/movie.ogg]
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-diffu/diffu1D_u0_FE_plug/movie.ogg]
 
 # "movie": "${doc_notes}/pub/diffu/html/mov-diffu/diffu1D_u0_FE_plug/movie.ogg"
 # Does not work:

doc/.src/chapters/mako_code.txt

@@ -29,15 +29,25 @@ doc2 = 'http://tinyurl.com/Langtangen-Linge-FDM-book'
 # 23jan2017, HP original lines:
 # doc = 'http://hplgit.github.io/fdm-book/doc/'
 # doc = 'http://tinyurl.com/pu5uyfn'
-doc = 'http://htmlpreview.github.io/?https://github.com/slgit/fdm-book-mov/blob/master'
-doc = 'http://tinyurl.com/gmw2yrj'
+# sl, testing - these 2 lines work
+# doc = 'http://htmlpreview.github.io/?https://github.com/slgit/fdm-book-mov/blob/master'
+# doc = 'http://tinyurl.com/gmw2yrj'
+
+doc = 'http://htmlpreview.github.io/?https://github.com/hplgit/fdm-book/blob/master/doc/pub'
+doc = 'http://tinyurl.com/hbcasmj'
+
+
 
 # For movies:
 # 24jan2017, HP original lines:
 # docraw = 'https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/.src/book/'
 # docraw = 'http://tinyurl.com/hfdndao'
-docraw = 'https://raw.githubusercontent.com/slgit/fdm-book-mov/master/'
-docraw = 'http://tinyurl.com/zeyvdse'
+# sl, testing - these 2 lines work, except for the Movie 1, etc, typesetting:
+# docraw = 'https://raw.githubusercontent.com/slgit/fdm-book-mov/master/'
+# docraw = 'http://tinyurl.com/zeyvdse'
+docraw = 'https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/'
+docraw = 'http://tinyurl.com/gokgkov'
+
 
 
 #writing_reports = 'http://hplgit.github.io/teamods/writing_reports'

doc/.src/chapters/vib/vib_gen.do.txt

@@ -429,7 +429,7 @@ $\Delta t = 0.05$, and $T=140$. The relevant command to run is
 Terminal> python vib.py --s 'sin(u)' --F '3*cos(4*t)' --c 0.03
 !ec
 This results in a "moving window following the function":
-"${doc_notes}/mov-vib/vib_generalized_dt0.05/index.html" on the screen.
+"${doc_notes}/vib/html//mov-vib/vib_generalized_dt0.05/index.html" on the screen.
 Figure ref{vib:ode2:fig:demo} shows a part of the time series.
 
 FIGURE: [fig-vib/vib_gen_demo, width=600 frac=1.0] Damped oscillator excited by a sinusoidal function. label{vib:ode2:fig:demo}

doc/.src/chapters/wave/wave1D_fd1.do.txt

@@ -361,7 +361,7 @@ We can now summarize the computational algorithm:
 The algorithm essentially consists of moving a finite difference
 stencil through all the mesh points, which can be seen as an animation
 in a "web page":
-"${doc_notes}/mov-wave/D_stencil_gpl/index.html"
+"${doc_notes}/book/html/mov-wave/D_stencil_gpl/index.html"
 or a "movie file":
 "${docraw}/mov-wave/D_stencil_gpl/movie.ogg".
 

doc/.src/chapters/wave/wave1D_fd2.do.txt

@@ -4,7 +4,7 @@ label{wave:pde2:Neumann}
 The boundary condition $u=0$ in a wave equation reflects the wave, but
 $u$ changes sign at the boundary, while the condition $u_x=0$ reflects
 the wave as a mirror and preserves the sign, see a "web page":
-"${doc_notes}/mov-wave/demo_BC_gaussian/index.html" or a
+"${doc_notes}/book/html/mov-wave/demo_BC_gaussian/index.html" or a
 "movie file":
 "${docraw}/mov-wave/demo_BC_gaussian/movie.flv" for
 demonstration.
@@ -158,7 +158,7 @@ The modification of the scheme at the boundary is also required for
 the special formula for the first time step. How the stencil moves
 through the mesh and is modified at the boundary can be illustrated by
 an animation in a "web page":
-"${doc_notes}/mov-wave/N_stencil_gpl/index.html"
+"${doc_notes}/book/html/mov-wave/N_stencil_gpl/index.html"
 or a "movie file":
 "${docraw}/mov-wave/N_stencil_gpl/movie.ogg".
 

doc/.src/chapters/wave/wave1D_prog.do.txt

@@ -373,7 +373,7 @@ calling `viz` in this application goes as follows:
 The associated program has the name "`wave1D_u0.py`":
 "${src_wave}/wave1D/wave1D_u0.py". Run
 the program and watch the "movie of the vibrating string":
-"${doc_notes}/mov-wave/guitar_C0.8/movie.html".
+"${doc_notes}/wave/html/mov-wave/guitar_C0.8/movie.html".
 The string should ideally consist of straight segments, but these are
 somewhat wavy due to numerical approximation. Run the case with the
 `wave1D_u0.py` code and $C=1$ to see the exact solution.

doc/.src/chapters/wave/wave2D_prog.do.txt

@@ -413,7 +413,7 @@ It is wise to use a high frame rate -- a low one will just skip many
 frames. There may also be considerable quality differences between the
 different formats.
 
-MOVIE: [mov-wave/gnuplot/wave2D_u0_gaussian/movie25.mp4]
+MOVIE: [https://raw.githubusercontent.com/hplgit/fdm-book/master/doc/pub/book/html/mov-wave/gnuplot/wave2D_u0_gaussian/movie25.mp4]
 
 idx{`Mayavi`}
 idx{`mlab`}
@@ -537,7 +537,7 @@ can use `ffmpeg` to create videos.
 
 FIGURE: [fig-wave/mayavi2D_gaussian1.png, width=600 frac=0.8] Plot with Mayavi.
 
-MOVIE: [mov-wave/mayavi/wave2D_u0_gaussian/movie.mp4]
+MOVIE: [https://github.com/hplgit/fdm-book/blob/master/doc/pub/book/html/mov-wave/mayavi/wave2D_u0_gaussian/movie.mp4]
 
 
 ======= Exercises =======