Remove DocOnce dependencies and legacy files

- Delete all .do.txt files and conversion scripts
- Remove doconce, mako, and related dependencies from pyproject.toml and requirements.txt
- Replace doconce combine_images with ImageMagick montage in source files
- Clean up .gitignore, config files, and documentation references
- Remove legacy doc/ build directory

Author: ggorman

.gitignore

@@ -46,28 +46,9 @@ temp*
 .idea
 __pycache__
 _minted-*
-# doconce:
-.*_html_file_collection
-.*.exerinfo
-.*.copyright
-sphinx-rootdir
-Trash
 # Generated/published content (regenerated by build scripts):
 doc/pub/
 
-# Generated LaTeX files (in doc/.src/book/):
-book.tex
-book.pdf
-book.dlog
-latex_figs/
-svmonodo.cls
-t4do.sty
-newcommands_keep.tex
-tmp_mako__*.do.txt
-tmp_preprocess__*.do.txt
-# Test files:
-title_test.*
-
 /.quarto/
 /_book/
 **/*.quarto_ipynb

.markdownlint.yaml

@@ -59,7 +59,7 @@ MD018: false
 # MD036 - Emphasis as heading (false positive from a) b) c) exercise labels)
 MD036: false
 
-# MD004 - Unordered list style (allow both dash and plus - converted from DocOnce)
+# MD004 - Unordered list style (allow both dash and plus)
 MD004: false
 
 # MD031 - Blanks around fences (false positives in nested documentation examples)

README.do.txt

@@ -153,7 +153,7 @@ format:
         \newcommand{\Integerp}{\mathbb{N}}
         \newcommand{\Integer}{\mathbb{Z}}
 
-# Quarto variables (replacement for Mako variables)
+# Quarto variables
 # These can be referenced as {{< var name >}} in documents
 src: "https://github.com/hplgit/fdm-book/tree/master/src"
 src_vib: "https://github.com/hplgit/fdm-book/tree/master/src/vib"

README.sh

@@ -993,9 +993,10 @@ def investigate():
     for gamma in gamma_values:
         for ext in "pdf", "png":
             cmd = (
-                "doconce combine_images -2 "
+                "montage "
                 "tmp1_gamma{gamma:g}_s1.{ext} "
                 "tmp1_gamma{gamma:g}_s2.{ext} "
+                "-tile 2x1 -geometry +0+0 "
                 "welding_gamma{gamma:g}.{ext}".format(**vars())
             )
             os.system(cmd)

_quarto.yml

@@ -1155,12 +1155,12 @@ def demo_fig_random_walks1D():
             files = [
                 os.path.join("tmp_%d" % n, "tmp%d.%s" % (j + 1, ext)) for n in num_walks
             ]
-            cmd = "doconce combine_images -%d %s rw1D_%s_%s.%s" % (
-                3 if len(num_walks) == 3 else 2,
+            ncols = 3 if len(num_walks) == 3 else 2
+            output = "rw1D_%s_%s.%s" % (plot, "_".join([str(n) for n in num_walks]), ext)
+            cmd = "montage %s -tile %dx1 -geometry +0+0 %s" % (
                 " ".join(files),
-                plot,
-                "_".join([str(n) for n in num_walks]),
-                ext,
+                ncols,
+                output,
             )
             print(cmd)
             os.system(cmd)
@@ -1826,12 +1826,12 @@ def demo_fig_random_walks1D():
             files = [
                 os.path.join("tmp_%d" % n, "tmp%d.%s" % (j + 1, ext)) for n in num_walks
             ]
-            cmd = "doconce combine_images -%d %s rw1D_%s_%s.%s" % (
-                3 if len(num_walks) == 3 else 2,
+            ncols = 3 if len(num_walks) == 3 else 2
+            output = "rw1D_%s_%s.%s" % (plot, "_".join([str(n) for n in num_walks]), ext)
+            cmd = "montage %s -tile %dx1 -geometry +0+0 %s" % (
                 " ".join(files),
-                plot,
-                "_".join([str(n) for n in num_walks]),
-                ext,
+                ncols,
+                output,
             )
             print(cmd)
             os.system(cmd)
@@ -2196,12 +2196,12 @@ def demo_fig_random_walks1D():
             files = [
                 os.path.join("tmp_%d" % n, "tmp%d.%s" % (j + 1, ext)) for n in num_walks
             ]
-            cmd = "doconce combine_images -%d %s rw1D_%s_%s.%s" % (
-                3 if len(num_walks) == 3 else 2,
+            ncols = 3 if len(num_walks) == 3 else 2
+            output = "rw1D_%s_%s.%s" % (plot, "_".join([str(n) for n in num_walks]), ext)
+            cmd = "montage %s -tile %dx1 -geometry +0+0 %s" % (
                 " ".join(files),
-                plot,
-                "_".join([str(n) for n in num_walks]),
-                ext,
+                ncols,
+                output,
             )
             print(cmd)
             os.system(cmd)

chapters/diffu/diffu_exer.qmd

@@ -98,9 +98,10 @@ def investigate():
     for gamma in gamma_values:
         for ext in "pdf", "png":
             cmd = (
-                "doconce combine_images -2 "
+                "montage "
                 "tmp1_gamma{gamma:g}_s1.{ext} "
                 "tmp1_gamma{gamma:g}_s2.{ext} "
+                "-tile 2x1 -geometry +0+0 "
                 "welding_gamma{gamma:g}.{ext}".format(**vars())
             )
             os.system(cmd)

chapters/diffu/diffu_rw.qmd

@@ -27,8 +27,8 @@
         visualize(u, t, title=f"gamma={gamma:g}", filename=f"tmp_{gamma}")
         print(gamma, "max u amplitude:", np.abs(u).max())
     for ext in "png", "pdf":
-        cmd = "doconce combine_images "
-        cmd += " ".join([f"tmp_{gamma}." + ext for gamma in gamma_values])
-        cmd += " resonance%d." % (i + 1) + ext
+        files = " ".join([f"tmp_{gamma}." + ext for gamma in gamma_values])
+        output = "resonance%d.%s" % (i + 1, ext)
+        cmd = "montage %s -tile 2x2 -geometry +0+0 %s" % (files, output)
         os.system(cmd)
 raw_input()