Omnibus dependency updates; switch to pointer field for LinuxPids.Limit (#2682)

* Omnibus dependency updates

Merge multiple dependabot updates (including alerts):
 - #2468
 - #2515
 - #2516
 - #2534
 - #2535
 - #2536
 - #2551
 - #2671
 - #2672
 - #2675
 - #2677
 - #2678
 - #2679
 - #2680
 - #2681

Also update several other direct dependencies.

Signed-off-by: Hamza El-Saawy <hamzaelsaawy@microsoft.com>

* Switch to pointer field for `LinuxPids.Limit`

`github.com/opencontainers/runtime-spec/specs-go.LinuxPids.Limit`
changed type from `int64` to `*int64` in `v1.3.0`.
Update code accordingly.

Signed-off-by: Hamza El-Saawy <hamzaelsaawy@microsoft.com>

* go mod tidy and vendor; regenerate proto files

Signed-off-by: Hamza El-Saawy <hamzaelsaawy@microsoft.com>

* test fixes

Signed-off-by: Hamza El-Saawy <hamzaelsaawy@microsoft.com>

---------

Signed-off-by: Hamza El-Saawy <hamzaelsaawy@microsoft.com>

Author: helsaawy

.github/workflows/ci.yml

@@ -561,6 +561,9 @@ jobs:
           BUSYBOX_TESTING_IMAGE_REF: "registry.k8s.io/e2e-test-images/busybox:1.29-2"
           RESOURCE_CONSUMER_TESTING_IMAGE_REF: "registry.k8s.io/e2e-test-images/resource-consumer:1.10"
           CGO_ENABLED: 1
+          # TODO: remove when https://github.com/containerd/containerd/pull/13205 is backported to v2.2 or
+          # containerd is updated to v2.3
+          CGROUP_DRIVER: 0
         run: |
           cat > "${{ env.TEST_IMAGE_LIST }}" << EOF
           busybox = "${{ env.BUSYBOX_TESTING_IMAGE_REF }}"

cmd/containerd-shim-runhcs-v1/options/runhcs.pb.go

@@ -1,6 +1,6 @@
 module github.com/Microsoft/hcsshim
 
-go 1.24.0
+go 1.25.0
 
 // protobuf/gRPC/ttrpc generation
 tool (
@@ -29,85 +29,84 @@ require (
 	github.com/Microsoft/go-winio v0.6.3-0.20251027160822-ad3df93bed29
 	github.com/blang/semver/v4 v4.0.0
 	github.com/cenkalti/backoff/v4 v4.3.0
-	github.com/containerd/cgroups/v3 v3.0.5
+	github.com/containerd/cgroups/v3 v3.1.3
 	github.com/containerd/console v1.0.5
-	github.com/containerd/containerd/api v1.9.0
-	github.com/containerd/containerd/v2 v2.1.2
+	github.com/containerd/containerd/api v1.10.0
+	github.com/containerd/containerd/v2 v2.2.2
 	github.com/containerd/errdefs v1.0.0
 	github.com/containerd/errdefs/pkg v0.3.0
 	github.com/containerd/go-runc v1.1.0
 	github.com/containerd/log v0.1.0
-	github.com/containerd/platforms v1.0.0-rc.1
+	github.com/containerd/platforms v1.0.0-rc.4
 	github.com/containerd/plugin v1.0.0
-	github.com/containerd/ttrpc v1.2.7
+	github.com/containerd/ttrpc v1.2.8
 	github.com/containerd/typeurl/v2 v2.2.3
 	github.com/google/go-cmp v0.7.0
-	github.com/google/go-containerregistry v0.20.1
+	github.com/google/go-containerregistry v0.21.5
 	github.com/google/uuid v1.6.0
 	github.com/linuxkit/virtsock v0.0.0-20241009230534-cb6a20cc0422
 	github.com/mattn/go-shellwords v1.0.12
 	github.com/moby/sys/user v0.4.0
 	github.com/open-policy-agent/opa v0.70.0
-	github.com/opencontainers/cgroups v0.0.4
-	github.com/opencontainers/runc v1.3.3
-	github.com/opencontainers/runtime-spec v1.2.1
+	github.com/opencontainers/cgroups v0.0.6
+	github.com/opencontainers/runc v1.4.2
+	github.com/opencontainers/runtime-spec v1.3.0
 	github.com/pelletier/go-toml v1.9.5
 	github.com/pkg/errors v0.9.1
-	github.com/samber/lo v1.52.0
-	github.com/sirupsen/logrus v1.9.3
-	github.com/urfave/cli v1.22.16
-	github.com/urfave/cli/v2 v2.27.6
+	github.com/samber/lo v1.53.0
+	github.com/sirupsen/logrus v1.9.4
+	github.com/urfave/cli v1.22.17
+	github.com/urfave/cli/v2 v2.27.7
 	github.com/vishvananda/netlink v1.3.1
 	github.com/vishvananda/netns v0.0.5
-	go.etcd.io/bbolt v1.4.0
+	go.etcd.io/bbolt v1.4.3
 	go.opencensus.io v0.24.0
 	go.uber.org/mock v0.6.0
-	golang.org/x/net v0.48.0
-	golang.org/x/sync v0.19.0
-	golang.org/x/sys v0.40.0
-	google.golang.org/grpc v1.79.3
-	google.golang.org/protobuf v1.36.10
+	golang.org/x/net v0.53.0
+	golang.org/x/sync v0.20.0
+	golang.org/x/sys v0.43.0
+	google.golang.org/grpc v1.80.0
+	google.golang.org/protobuf v1.36.11
 )
 
 require (
-	cyphar.com/go-pathrs v0.2.1 // indirect
+	cyphar.com/go-pathrs v0.2.4 // indirect
 	github.com/OneOfOne/xxhash v1.2.8 // indirect
 	github.com/agnivade/levenshtein v1.2.0 // indirect
 	github.com/akavel/rsrc v0.10.2 // indirect
 	github.com/beorn7/perks v1.0.1 // indirect
 	github.com/cespare/xxhash/v2 v2.3.0 // indirect
-	github.com/checkpoint-restore/go-criu/v6 v6.3.0 // indirect
+	github.com/checkpoint-restore/go-criu/v7 v7.2.0 // indirect
 	github.com/cilium/ebpf v0.17.3 // indirect
 	github.com/containerd/continuity v0.4.5 // indirect
 	github.com/containerd/fifo v1.1.0 // indirect
 	github.com/containerd/protobuild v0.3.0 // indirect
-	github.com/containerd/stargz-snapshotter/estargz v0.15.1 // indirect
-	github.com/coreos/go-systemd/v22 v22.5.0 // indirect
-	github.com/cpuguy83/go-md2man/v2 v2.0.5 // indirect
-	github.com/cyphar/filepath-securejoin v0.6.0 // indirect
-	github.com/decred/dcrd/dcrec/secp256k1/v4 v4.2.0 // indirect
-	github.com/docker/cli v29.2.0+incompatible // indirect
-	github.com/docker/distribution v2.8.3+incompatible // indirect
-	github.com/docker/docker-credential-helpers v0.7.0 // indirect
+	github.com/containerd/stargz-snapshotter/estargz v0.18.2 // indirect
+	github.com/coreos/go-systemd/v22 v22.7.0 // indirect
+	github.com/cpuguy83/go-md2man/v2 v2.0.7 // indirect
+	github.com/cyphar/filepath-securejoin v0.6.1 // indirect
+	github.com/decred/dcrd/dcrec/secp256k1/v4 v4.4.0 // indirect
+	github.com/docker/cli v29.4.0+incompatible // indirect
+	github.com/docker/docker-credential-helpers v0.9.3 // indirect
 	github.com/docker/go-units v0.5.0 // indirect
-	github.com/fxamacker/cbor/v2 v2.7.0 // indirect
+	github.com/fxamacker/cbor/v2 v2.9.0 // indirect
 	github.com/go-ini/ini v1.67.0 // indirect
 	github.com/go-logr/logr v1.4.3 // indirect
 	github.com/go-logr/stdr v1.2.2 // indirect
 	github.com/gobwas/glob v0.2.3 // indirect
-	github.com/goccy/go-json v0.10.2 // indirect
+	github.com/goccy/go-json v0.10.3 // indirect
 	github.com/godbus/dbus/v5 v5.1.0 // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
-	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
+	github.com/golang/groupcache v0.0.0-20241129210726-2c02b8208cf8 // indirect
 	github.com/golang/protobuf v1.5.4 // indirect
 	github.com/gorilla/mux v1.8.1 // indirect
 	github.com/josephspurrier/goversioninfo v1.5.0 // indirect
-	github.com/klauspost/compress v1.18.0 // indirect
+	github.com/klauspost/compress v1.18.5 // indirect
 	github.com/lestrrat-go/backoff/v2 v2.0.8 // indirect
 	github.com/lestrrat-go/blackmagic v1.0.2 // indirect
 	github.com/lestrrat-go/httpcc v1.0.1 // indirect
 	github.com/lestrrat-go/iter v1.0.2 // indirect
-	github.com/lestrrat-go/jwx v1.2.29 // indirect
+	github.com/lestrrat-go/jwx v1.2.31 // indirect
 	github.com/lestrrat-go/option v1.0.1 // indirect
 	github.com/mdlayher/socket v0.5.1 // indirect
 	github.com/mdlayher/vsock v1.2.1 // indirect
@@ -119,35 +118,36 @@ require (
 	github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect
 	github.com/opencontainers/go-digest v1.0.0 // indirect
 	github.com/opencontainers/image-spec v1.1.1 // indirect
-	github.com/opencontainers/selinux v1.13.0 // indirect
-	github.com/prometheus/client_golang v1.22.0 // indirect
-	github.com/prometheus/client_model v0.6.1 // indirect
-	github.com/prometheus/common v0.62.0 // indirect
-	github.com/prometheus/procfs v0.15.1 // indirect
+	github.com/opencontainers/selinux v1.13.1 // indirect
+	github.com/prometheus/client_golang v1.23.2 // indirect
+	github.com/prometheus/client_model v0.6.2 // indirect
+	github.com/prometheus/common v0.66.1 // indirect
+	github.com/prometheus/procfs v0.16.1 // indirect
 	github.com/rcrowley/go-metrics v0.0.0-20200313005456-10cdbea86bc0 // indirect
 	github.com/russross/blackfriday/v2 v2.1.0 // indirect
-	github.com/seccomp/libseccomp-golang v0.10.0 // indirect
-	github.com/tchap/go-patricia/v2 v2.3.2 // indirect
-	github.com/vbatts/tar-split v0.11.5 // indirect
-	github.com/veraison/go-cose v1.1.0 // indirect
+	github.com/seccomp/libseccomp-golang v0.11.1 // indirect
+	github.com/tchap/go-patricia/v2 v2.3.3 // indirect
+	github.com/vbatts/tar-split v0.12.2 // indirect
+	github.com/veraison/go-cose v1.3.0 // indirect
 	github.com/x448/float16 v0.8.4 // indirect
 	github.com/xeipuuv/gojsonpointer v0.0.0-20190905194746-02993c407bfb // indirect
 	github.com/xeipuuv/gojsonreference v0.0.0-20180127040603-bd5ef7bd5415 // indirect
 	github.com/xrash/smetrics v0.0.0-20240521201337-686a1a2994c1 // indirect
 	github.com/yashtewari/glob-intersection v0.2.0 // indirect
 	go.opentelemetry.io/auto/sdk v1.2.1 // indirect
-	go.opentelemetry.io/otel v1.40.0 // indirect
-	go.opentelemetry.io/otel/metric v1.40.0 // indirect
-	go.opentelemetry.io/otel/sdk v1.40.0 // indirect
-	go.opentelemetry.io/otel/trace v1.40.0 // indirect
-	golang.org/x/crypto v0.46.0 // indirect
-	golang.org/x/mod v0.30.0 // indirect
-	golang.org/x/text v0.32.0 // indirect
-	golang.org/x/tools v0.39.0 // indirect
-	google.golang.org/genproto/googleapis/rpc v0.0.0-20251202230838-ff82c1b0f217 // indirect
-	google.golang.org/grpc/cmd/protoc-gen-go-grpc v1.5.1 // indirect
+	go.opentelemetry.io/otel v1.43.0 // indirect
+	go.opentelemetry.io/otel/metric v1.43.0 // indirect
+	go.opentelemetry.io/otel/sdk v1.43.0 // indirect
+	go.opentelemetry.io/otel/trace v1.43.0 // indirect
+	go.yaml.in/yaml/v2 v2.4.2 // indirect
+	golang.org/x/crypto v0.50.0 // indirect
+	golang.org/x/mod v0.35.0 // indirect
+	golang.org/x/text v0.36.0 // indirect
+	golang.org/x/tools v0.44.0 // indirect
+	google.golang.org/genproto/googleapis/rpc v0.0.0-20260120221211-b8f7ae30c516 // indirect
+	google.golang.org/grpc/cmd/protoc-gen-go-grpc v1.6.1 // indirect
 	gopkg.in/yaml.v3 v3.0.1 // indirect
-	sigs.k8s.io/yaml v1.4.0 // indirect
+	sigs.k8s.io/yaml v1.6.0 // indirect
 )
 
 replace google.golang.org/genproto => google.golang.org/genproto v0.0.0-20250428153025-10db94c68c34