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Fix docs
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docs/source/diffusion.rst

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@@ -93,4 +93,3 @@ predicting gene function.Genome Biology. (9), S4.
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4. Tsuda, K., et al. (2005). Fast protein classification with multiple networks. Bioinformatics, (21), 59–65.
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5. Vandin, F., et al. (2010). Algorithms for detecting significantly mutated pathways in cancer. Lecture Notes in
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Computer Science. 6044, 506–521.
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src/diffupy/utils.py

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@@ -37,7 +37,7 @@ def set_diagonal_matrix(matrix, d):
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return matrix
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def get_label_node(node: nx.Graph.node) -> str:
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def get_label_node(node: pybel.dsl.BaseAbundance) -> str:
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"""Get label node."""
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if hasattr(node, 'name') and node.name is not None:
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if node.name.lower() == "":
@@ -144,7 +144,7 @@ def print_dict_dimensions(entities_db, title):
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print(f'Total: {total} ')
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def get_simplegraph_from_multigraph(multigraph):
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def get_simple_graph_from_multigraph(multigraph):
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"""Convert undirected graph from multigraph."""
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graph = nx.Graph()
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for u, v, data in multigraph.edges(data=True):

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