@@ -48,25 +48,32 @@ Methods with statistical normalisation
4848 magnitude of the {raw} scores and the effect of the network topology: this is a quantification of the relative change
4949 in the node score before and after the network smoothing.
5050
51- Summary Table
52- -------------
53- | Scores | y+ | y- | yn | Normalized | Stochastic | Quantitative | Reference
54- Unnormalized
55- | raw | 1 | 0 | 0 | No | No | Yes | Vandin (2010) |
5651
57- | ml | 1 | -1 | 0 | No | No | No | Tsuda (2010) |
58-
59- | gm | 1 | -1 | k | No | No | No | Mostafavi (2008) |
60-
61- | ber_s | 1 | 0 | 0 | No | No | Yes | Bersanelli (2016)|
62-
63- Normalized
64-
65- | ber_p | 1 | 0 | 0* | Yes | Yes | Yes | Bersanelli (2016)|
66-
67- | mc | 1 | 0 | 0* | Yes | Yes | Yes | Bersanelli (2016)|
68-
69- | z | 1 | 0 | 0* | Yes | No | Yes | Harchaoui (2013) |
52+ Summary table of methods without statistical normalization
53+ ----------------------------------------------------------
54+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
55+ | Scores | y+ | y- | yn | Normalized | Stochastic | Quantitative | Reference |
56+ +===========================================+===================================+======================================+
57+ | raw | 1 | 0 | 0 | No | No. | Yes | Vandin (2010) |
58+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
59+ | ml | 1 | -1 | 0 | No | No | No | Tsuda (2010) |
60+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
61+ | gm | 1 | -1 | k | No | No | No | Mostafavi (2008) |
62+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
63+ | ber_s | 1 | 0 | 0 | No | No | Yes | Bersanelli (2016) |
64+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
65+
66+ Summary table of methods with statistical normalization
67+ -------------------------------------------------------
68+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
69+ | Scores | y+ | y- | yn | Normalized | Stochastic | Quantitative | Reference |
70+ +===========================================+===================================+======================================+
71+ | ber_p | 1 | 0 | 0* | Yes | Yes | Yes | Bersanelli (2016) |
72+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
73+ | mc | 1 | 0 | 0* | Yes | Yes | Yes | Bersanelli (2016) |
74+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
75+ | z | 1 | 0 | 0* | Yes | No | Yes | Harchaoui (2013) |
76+ +-------------+----------+----------+----------+---------------+----------------+----------------+---------------------+
7077
7178
7279.. automodule :: diffupy.diffusion
0 commit comments