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    11 repositories

    • localEnrichment

      Public
      Functions to perform Enrichment Analysis (ORA, XSEA by now) using local collections of sets
      R
      •
      Other
      •0•0•0•0•Updated Nov 29, 2025Nov 29, 2025

    • TFM_MDD_framework

      Public
      This work, developed by Jessica Valdivia García provides a nice example on how to build an automated framework. It is part of her MSc Thesis: "Desarrollo de un …
      R
      •1•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • Lheuristic

      Public
      New version of the Lheuristic package that uses `MultiAssayExperiment`class to manage expression and methylation data
      scatterplot-matrixl-shapedmethylation-expression
      scatterplot-matrixl-shapedmethylation-expression
      R
      •
      Other
      •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • Lheuristic0

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • Selecting_GRM

      Public
      Selection of genes with L pattern in the expression-methylation scatterplot, potentially regulated by methylation.
      HTML
      •
      MIT License
      •1•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • Lheuristic-Examples

      Public
      This repository contains examples and applications of analyses done using the Lheuristic package
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • FoodBiomarkerOntology

      Public
      :rocket: Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
      Python
      •
      Creative Commons Attribution 4.0 International
      •6•0•0•0•Updated May 3, 2022May 3, 2022

    • equivStandardTest

      Public
      Implements a naïve version af an equivalence test between two lists. For research purposes, not for applications!
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • goProfilesApp

      Public
      This application implements the package goProfiles to compare lists of genes based on their functional profiles.
      R
      •1•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • EquivalenceAnalysisOfGeneLists

      Public
      Supplementary materials for the paper "Equivalence Analysis of Gene Lists"
      0•0•0•0•Updated Jan 22, 2019Jan 22, 2019

    • goProfiles

      Public
      an R/Bioconductor package for the statistical analysis of functional profiles
      R
      •0•1•1•0•Updated Apr 20, 2018Apr 20, 2018
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