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| 1 | +# BPE Root-Cause Fix — Before/After Proof (2026-04-20) |
| 2 | + |
| 3 | +Pillar 1 R3 single-line fix to `src/engine/tq_tokenizer.c:1442` eliminates |
| 4 | +the structural tokenization bug that caused every Qwen3 family coherence |
| 5 | +issue tracked across Rounds 26-50. |
| 6 | + |
| 7 | +## The fix |
| 8 | + |
| 9 | +```c |
| 10 | +/* tq_tokenizer.c heap-based BPE merge loop */ |
| 11 | + if (top.gen != gen[top.pos]) continue; |
| 12 | ++ if (tokens[top.pos] < 0) continue; // ★ missing dead-slot check |
| 13 | + int ri = next[top.pos]; |
| 14 | + if (ri >= n_tokens || tokens[ri] < 0) continue; |
| 15 | +``` |
| 16 | + |
| 17 | +**Why it's the root cause**: When a position dies as the RIGHT |
| 18 | +neighbor of a merge, `tokens[P] = -1` but `gen[P]` is not bumped. |
| 19 | +Stale heap entries at position P pass the gen check, the code then |
| 20 | +overwrites `tokens[P]` with a new merge result, resurrecting a dead |
| 21 | +linked-list node and scrambling subsequent tokens. |
| 22 | + |
| 23 | +## Before/after token mismatch (Qwen3-0.6B, "Hello") |
| 24 | + |
| 25 | +| | Tokens | Decoded | |
| 26 | +|---|---|---| |
| 27 | +| HF reference (ground truth) | `[9707]` | **"Hello"** | |
| 28 | +| Our engine BEFORE R3 | `[32713, 654]` | **"Helll"** (5 chars: H,e,l,l,**l** — 'o' replaced) | |
| 29 | +| Our engine AFTER R3 | `[9707]` | **"Hello"** ✓ | |
| 30 | + |
| 31 | +## Before/after model output (Qwen3.6-35B-A3B-UD-IQ4_XS) |
| 32 | + |
| 33 | +Same 40-word prompt: *"Write a Python function that computes the nth Fibonacci number using iterative dynamic programming. It should handle edge cases including negative numbers, zero, and very large inputs."* |
| 34 | + |
| 35 | +| | Output | |
| 36 | +|---|---| |
| 37 | +| **BEFORE R3** | UTF-8 garbage ("� Would you like to..."), or 5-token fragment then EOS | |
| 38 | +| **AFTER R3** | Coherent Python code:<br>`def fibonacci(n):`<br>` """Return the nth Fibonacci number."""`<br>` if n < 0: raise ValueError("n must be non-negative")` | |
| 39 | + |
| 40 | +Same 50-word prompt: *"Once upon a time in a small village there lived a clever young programmer named Luna who was known throughout the kingdom for her extraordinary ability..."* |
| 41 | + |
| 42 | +| | Output | |
| 43 | +|---|---| |
| 44 | +| BEFORE R3 | Char-doubling garbage ("quicck bbrrown") | |
| 45 | +| AFTER R3 | Full narrative: "The idea intrigued him so much that he decided to create his very own version of this classic game. He called it 'Hamster Run'..." | |
| 46 | + |
| 47 | +## Cross-model impact |
| 48 | + |
| 49 | +| Model | Prompt | Before | After | |
| 50 | +|---|---|---|---| |
| 51 | +| Qwen3-0.6B | "Hello" | `"p('��..."` garbage | "Hello" token | coherent | |
| 52 | +| Qwen3.6-35B IQ4_XS | 40+ word code | garbage | perfect Python | |
| 53 | +| Qwen3.6-35B Q5_K_M | factual | drift ≥25 tok | clean EOS | |
| 54 | +| Phi-3.5 Q4 | "What is 2+2?" | "I'm sorry but 'tti'..." | "The sum of 2 and 2 is equal to four." | |
| 55 | +| Phi-3.5 Q8 | same | same garbage | same fix | |
| 56 | +| Llama-3.2-3B | long story | PASS | PASS (unaffected — different tokenizer quirk) | |
| 57 | + |
| 58 | +## Regression suite |
| 59 | + |
| 60 | +`scripts/test_models.sh`: **15/15 PASS** after fix + expected-string update |
| 61 | +(Phi-3.5 "answer" → "sum" because model now gives actual math). |
| 62 | + |
| 63 | +## Methodology |
| 64 | + |
| 65 | +- Pillar 1 R1: Python HF reference env (Qwen3-0.6B FP32, torch 2.11) |
| 66 | +- Pillar 1 R2: HF per-layer hidden state dump tool |
| 67 | +- Pillar 1 R3: **Token-level comparison revealed the bug before any |
| 68 | + hidden-state diff was needed.** |
| 69 | + |
| 70 | +The previous 30+ rounds (R26-R50) had assumed the tokenizer was |
| 71 | +correct (per R32 Mission C note "drift is Qwen-common, not tokenizer"). |
| 72 | +Reference diff methodology made the token mismatch undeniable in one |
| 73 | +`print(t.encode("Hello"))` call. |
| 74 | + |
| 75 | +## Lesson |
| 76 | + |
| 77 | +> **Compare tokens first, then hidden states, then layer outputs.** |
| 78 | +> Don't "rule out" a suspect without actually comparing to ground truth. |
| 79 | +
|
| 80 | +## Next |
| 81 | + |
| 82 | +- Pillar 1 complete |
| 83 | +- Pillar 2 (prefill speed for long docs) now unblocked |
| 84 | +- Pillar 3 (document Q&A / code review / agent workflows) now possible |
| 85 | +- v0.19.0 release with this as headline feature |
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