Merge remote-tracking branch 'origin/develop' into feature/unary-var-matrix

Author: SteveBronder

README.md

@@ -119,13 +119,16 @@ To build the development version of `math` with [`oneTBB`](https://github.com/on
 
 For example, installing [`oneTBB`](https://github.com/oneapi-src/oneTBB) on Linux 64-bit (`x86_64`) to `$HOME` directory (change if needed!):
 ```bash
-TBB_VERSION="2021.1.1"
+TBB_RELEASE="https://api.github.com/repos/oneapi-src/oneTBB/releases/latest"
+TBB_TAG=$(curl --silent $TBB_RELEASE | grep -Po '"tag_name": "\K.*?(?=")')
+TBB_VERSION=${TBB_TAG#?}
 
 wget https://github.com/oneapi-src/oneTBB/releases/download/v${TBB_VERSION}/oneapi-tbb-${TBB_VERSION}-lin.tgz
 tar zxvf oneapi-tbb-$TBB_VERSION-lin.tgz -C $HOME
 
 export TBB="$HOME/oneapi-tbb-$TBB_VERSION"
 ```
+Note that you may replace `TBB_VERSION=${TBB_TAG#?}` with a custom version number if needed ( check available releases [here](https://github.com/oneapi-src/oneTBB/releases) ).
 
 - Set the TBB environment variables (specifically: `TBB` for the installation prefix, `TBB_INC` for the directory that includes the header files, and `TBB_LIB` for the libraries directory).
 

make/tests

@@ -64,7 +64,7 @@ $(EXPRESSION_TESTS) : $(LIBSUNDIALS)
 # CVODES tests
 ##
 
-CVODES_TESTS := $(subst .cpp,$(EXE),$(call findfiles,test,*cvodes*_test.cpp) $(call findfiles,test,*_bdf_*_test.cpp) $(call findfiles,test,*_adams_*_test.cpp))
+CVODES_TESTS := $(subst .cpp,$(EXE),$(call findfiles,test,*cvodes*_test.cpp) $(call findfiles,test,*_bdf_*_test.cpp) $(call findfiles,test,*_adams_*_test.cpp) $(call findfiles,test,*_ode_typed_*test.cpp))
 $(CVODES_TESTS) : $(LIBSUNDIALS)
 
 

stan/math/opencl/copy.hpp

@@ -9,7 +9,6 @@
 #include <stan/math/opencl/opencl_context.hpp>
 #include <stan/math/opencl/value_type.hpp>
 #include <stan/math/opencl/scalar_type.hpp>
-#include <stan/math/opencl/kernels/copy.hpp>
 #include <stan/math/opencl/kernels/pack.hpp>
 #include <stan/math/opencl/kernels/unpack.hpp>
 #include <stan/math/opencl/err/check_opencl.hpp>

stan/math/opencl/err.hpp

@@ -1,10 +1,7 @@
 #ifndef STAN_MATH_OPENCL_ERR_HPP
 #define STAN_MATH_OPENCL_ERR_HPP
 
-#include <stan/math/opencl/err/check_diagonal_zeros.hpp>
-#include <stan/math/opencl/err/check_invalid_matrix_view.hpp>
 #include <stan/math/opencl/err/check_mat_size_one.hpp>
-#include <stan/math/opencl/err/check_nan.hpp>
 #include <stan/math/opencl/err/check_opencl.hpp>
 #include <stan/math/opencl/err/check_symmetric.hpp>
 #include <stan/math/opencl/err/check_triangular.hpp>

stan/math/opencl/err/check_diagonal_zeros.hpp

@@ -9,24 +9,6 @@
 namespace stan {
 namespace math {
 
-/** \ingroup error_checks_opencl
- * Check if the <code>matrix_cl</code> has a single element.
- *
- * @param function Function name (for error messages)
- * @param name Variable name (for error messages)
- * @param A <code>matrix_cl</code> to test
- *
- * @throw <code>std::domain_error</code> if the <code>matrix_cl</code>
- *    size is not 1
- */
-template <typename T>
-inline void check_mat_size_one(const char* function, const char* name,
-                               const matrix_cl<T>& A) {
-  if (A.size() != 1) {
-    invalid_argument(function, name, "should have exactly one element.", "");
-  }
-}
-
 /** \ingroup error_checks_opencl
  * Check if the <code>matrix_cl</code> has a single element.
  *