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Merged
XimeAixa merged 2 commits into from
May 14, 2026
Merged

Pre release cleanup (2026/05/14) #31

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ebcbbed
fix ontology roots and obo namespace for material entities
XimeAixa May 14, 2026
d74bf32
update imports
XimeAixa May 14, 2026
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12 changes: 12 additions & 0 deletions src/ontology/idpo-edit.owl
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Expand Up @@ -13,6 +13,8 @@ Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000029>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000075>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000083>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000091>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000094>)
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/IDPO_0000100>)
Annotation(<http://purl.org/dc/terms/description> "It describes structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state.")
Annotation(<http://purl.org/dc/terms/license> <https://creativecommons.org/licenses/by/4.0/>)
Expand Down Expand Up @@ -932,55 +934,65 @@ AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/IDPO_0000089>
# Class: <http://purl.obolibrary.org/obo/IDPO_0000091> (compound)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000091> "A molecule composed of two or more distinct chemical components.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000091> "compound")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000091> "IDPO:0000091")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000091> "compound")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000091> <http://purl.obolibrary.org/obo/BFO_0000040>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000092> (condensate)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000092> "A compound formed via phase separation or related physicochemical processes.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000092> "compound")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000092> "IDPO:0000092")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000092> "condensate")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000092> <http://purl.obolibrary.org/obo/IDPO_0000091>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000093> (biomolecular condensate)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000093> "A condensate composed of biomolecules such as proteins, protein regions, or nucleic acid strands, typically formed through phase separation driven by weak multivalent interactions.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000093> "compound")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000093> "IDPO:0000093")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000093> "biomolecular condensate")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000093> <http://purl.obolibrary.org/obo/IDPO_0000092>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000094> (protein)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000094> "A molecule composed of one or more polypeptide chains.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000094> "protein")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000094> "IDPO:0000094")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000094> "protein")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000094> <http://purl.obolibrary.org/obo/BFO_0000040>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000095> (protein region)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000095> "A contiguous segment of a protein that can be distinguished by its structural, functional, or sequence properties.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000095> "protein")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000095> "IDPO:0000095")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000095> "protein region")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000095> <http://purl.obolibrary.org/obo/IDPO_0000094>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000096> (intrinsically disordered protein)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000096> "A protein that wholly lacks a stable, fixed three-dimensional structure under physiological conditions.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/OMO_0003000> <http://purl.obolibrary.org/obo/IDPO_0000096> "IDP")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000096> "protein")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000096> "IDPO:0000096")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000096> "intrinsically disordered protein")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000096> <http://purl.obolibrary.org/obo/IDPO_0000094>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000097> (intrinsically disordered region)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000097> "A protein region that lacks a stable, fixed three-dimensional structure under physiological conditions.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/OMO_0003000> <http://purl.obolibrary.org/obo/IDPO_0000097> "IDR")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000097> "protein")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000097> "IDPO:0000097")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000097> "intrinsically disordered region")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000097> <http://purl.obolibrary.org/obo/IDPO_0000095>)

# Class: <http://purl.obolibrary.org/obo/IDPO_0000098> (ordered region)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IDPO_0000098> "A protein region that adopts a stable, fixed three-dimensional structure under physiological conditions.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/IDPO_0000098> "protein")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/IDPO_0000098> "IDPO:0000098")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IDPO_0000098> "ordered region")
SubClassOf(<http://purl.obolibrary.org/obo/IDPO_0000098> <http://purl.obolibrary.org/obo/IDPO_0000095>)
Expand Down
6 changes: 3 additions & 3 deletions src/ontology/imports/merged_import.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/idpo/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/idpo/releases/2026-05-05/imports/merged_import.owl>
Annotation(owl:versionInfo "2026-05-05")
<http://purl.obolibrary.org/obo/idpo/releases/2026-05-14/imports/merged_import.owl>
Annotation(owl:versionInfo "2026-05-14")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Expand Down Expand Up @@ -159,7 +159,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.gen
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "has broad synonym"@en)
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "has_broad_synonym")

# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (has cross-reference)
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (database_cross_reference)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.")
Expand Down
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