v1.7.1 prep

CHANGELOG.md

@@ -5,6 +5,34 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.7.1] - 2026-05-20
+
+Maintenance release. Dependency and lock-file updates only — there are no
+source code or public API changes. The published runtime dependencies
+(`httpx`, `typing_extensions`) are unchanged; the updates below affect the
+pinned development, testing, and optional-extra dependencies in `uv.lock`
+and are not shipped in the wheel/sdist.
+
+### Security
+
+- Updated pinned development and transitive dependencies in `uv.lock` to
+  resolve reported advisories. None of these affect the published runtime
+  dependencies:
+  - `idna` 3.11 → 3.15 — fixes a bypass of the CVE-2024-3651 mitigation in
+    `idna.encode()` (transitive via `httpx`/`anyio`).
+  - `pytest` 9.0.2 → 9.0.3 — fixes vulnerable tmpdir handling (dev only).
+  - `python-dotenv` 1.2.1 → 1.2.2 — fixes symlink following in `set_key`
+    that allowed arbitrary file overwrite (dev only).
+  - `pygments` 2.19.2 → 2.20.0 — fixes a ReDoS in GUID matching
+    (transitive, dev only).
+
+### Changed
+
+- Bumped `aiohttp` and added `aiohappyeyeballs` in `uv.lock` (#17).
+- Locked the optional FHIR extras (`fhirpy`, `fhir-resources`) and their
+  transitive dependencies in `uv.lock`. These were already declared in
+  `pyproject.toml` but had never been captured in the lock file.
+
 ## [1.7.0] - 2026-04-14
 
 ### Added
@@ -216,7 +244,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Full type hints and PEP 561 compliance
 - HTTP/2 support via httpx
 
-[Unreleased]: https://github.com/omopHub/omophub-python/compare/v1.6.0...HEAD
+[Unreleased]: https://github.com/omopHub/omophub-python/compare/v1.7.1...HEAD
+[1.7.1]: https://github.com/omopHub/omophub-python/compare/v1.7.0...v1.7.1
+[1.7.0]: https://github.com/omopHub/omophub-python/compare/v1.6.0...v1.7.0
 [1.6.0]: https://github.com/omopHub/omophub-python/compare/v1.5.1...v1.6.0
 [1.5.1]: https://github.com/omopHub/omophub-python/compare/v1.5.0...v1.5.1
 [1.5.0]: https://github.com/omopHub/omophub-python/compare/v1.4.1...v1.5.0

examples/search_concepts.py

@@ -16,8 +16,10 @@ def basic_search() -> None:
     """Demonstrate basic concept search."""
     print("=== Basic Search ===")
 
-    # Simple text search - returns a flat list of concept dicts
-    concepts = client.search.basic("heart attack")
+    # ``search.basic`` returns a dict with a ``concepts`` list plus pagination
+    # metadata - read the list from ``result["concepts"]``.
+    result = client.search.basic("heart attack")
+    concepts = result["concepts"]
     print(f"Found {len(concepts)} concepts for 'heart attack'")
 
     for c in concepts[:3]:
@@ -28,14 +30,15 @@ def filtered_search() -> None:
     """Demonstrate search with filters."""
     print("\n=== Filtered Search ===")
 
-    # Search in specific vocabularies
-    concepts = client.search.basic(
+    # Search in specific vocabularies. Same dict-shaped response as above.
+    result = client.search.basic(
         "myocardial infarction",
         vocabulary_ids=["SNOMED", "ICD10CM"],
         domain_ids=["Condition"],
         standard_concept="S",  # Only standard concepts
         page_size=10,
     )
+    concepts = result["concepts"]
     print(f"Found {len(concepts)} standard condition concepts")
 
     for c in concepts[:5]:
@@ -45,14 +48,15 @@ def filtered_search() -> None:
 def bulk_lexical_search() -> None:
     """Demonstrate bulk lexical search — multiple queries in one call.
 
-    ``bulk_basic`` returns a list of per-query result objects. Each item
-    has ``search_id``, ``query``, ``results`` (a nested list), ``status``,
-    and ``duration``.
+    ``bulk_basic`` returns a dict with a ``results`` list (plus
+    ``total_searches`` / ``completed_searches`` / ``failed_searches``
+    counts). Each item in ``results`` has ``search_id``, ``query``,
+    ``results`` (a nested list of concepts), ``status``, and ``duration``.
     """
     print("\n=== Bulk Lexical Search ===")
 
     # Search for multiple terms at once (up to 50)
-    items = client.search.bulk_basic(
+    response = client.search.bulk_basic(
         [
             {"search_id": "q1", "query": "diabetes mellitus"},
             {"search_id": "q2", "query": "hypertension"},
@@ -61,13 +65,13 @@ def bulk_lexical_search() -> None:
         defaults={"vocabulary_ids": ["SNOMED"], "page_size": 5},
     )
 
-    for item in items:
+    for item in response["results"]:
         print(
             f"  {item['search_id']}: {len(item['results'])} results ({item['status']})"
         )
 
     # Per-query overrides — different domains per query
-    items = client.search.bulk_basic(
+    response = client.search.bulk_basic(
         [
             {
                 "search_id": "conditions",
@@ -80,7 +84,7 @@ def bulk_lexical_search() -> None:
     )
 
     print("\n  Per-query domain overrides:")
-    for item in items:
+    for item in response["results"]:
         print(f"    {item['search_id']}:")
         for c in item["results"][:3]:
             print(f"      {c['concept_name']} ({c['vocabulary_id']}/{c['domain_id']})")
@@ -124,8 +128,8 @@ def bulk_semantic_search() -> None:
 def autocomplete_example() -> None:
     """Demonstrate autocomplete suggestions.
 
-    ``concepts.suggest`` returns a flat list of concept dicts - the same
-    shape as ``search.basic`` - so you read ``concept_name`` directly.
+    ``concepts.suggest`` returns its own response shape (distinct from
+    ``search.basic``); read suggestion fields off each item directly.
     """
     print("\n=== Autocomplete ===")