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Clarify interpretation of noise distributions #656
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@@ -748,7 +748,7 @@ Noise distributions | |
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| Denote by :math:`m` the measured value, | ||
| :math:`y:=\text{observableFormula}` the simulated value | ||
| (the location parameter of the noise distribution), | ||
| (the median of the noise distribution), | ||
| and :math:`\sigma` the scale parameter of the noise distribution | ||
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Member
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Same problem here, right? For the log-normal distribution, sigma wouldn't be the scale but its logarithm?
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There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Actually, for normal distributions it is the standard distribution (no log), while for Laplace it is the scale. I have made this clearer. |
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| as given via the ``noiseFormula`` field (the standard deviation of a normal, | ||
| or the scale parameter of a Laplace model). | ||
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@@ -761,25 +761,31 @@ Then we have the following effective noise distributions: | |
| * - Type | ||
| - ``noiseDistribution`` | ||
| - Probability density function (PDF) | ||
| * - Gaussian distribution | ||
| * - | Gaussian distribution | ||
| | (i.e., :math:`m` is normally distributed as :math:`m \sim \mathcal{N}(y, \sigma)`) | ||
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| - ``normal`` | ||
| - .. math:: | ||
| \pi(m|y,\sigma) = \frac{1}{\sqrt{2\pi}\sigma}\exp\left(-\frac{(m-y)^2}{2\sigma^2}\right) | ||
| * - | Log-normal distribution | ||
| | (i.e., :math:`\log(m)` is normally distributed) | ||
| | (i.e., :math:`\log(m)` is normally distributed as :math:`\log(m) \sim \mathcal{N}(\log(y), \sigma)`) | ||
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| - ``log-normal`` | ||
| - .. math:: | ||
| \pi(m|y,\sigma) = \frac{1}{\sqrt{2\pi}\sigma m}\exp\left(-\frac{(\log m - \log y)^2}{2\sigma^2}\right) | ||
| * - Laplace distribution | ||
| - ``laplace`` | ||
| - | ``laplace`` | ||
| | (i.e., :math:`m` is Laplace distributed as :math:`m \sim \mathcal{L}(y, \sigma)`) | ||
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| - .. math:: | ||
| \pi(m|y,\sigma) = \frac{1}{2\sigma}\exp\left(-\frac{|m-y|}{\sigma}\right) | ||
| * - | Log-Laplace distribution | ||
| | (i.e., :math:`\log(m)` is Laplace distributed) | ||
| | (i.e., :math:`\log(m)` is Laplace distributed as :math:`\log(m) \sim \mathcal{L}(\log(y), \sigma)`) | ||
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| - ``log-laplace`` | ||
| - .. math:: | ||
| \pi(m|y,\sigma) = \frac{1}{2\sigma m}\exp\left(-\frac{|\log m - \log y|}{\sigma}\right) | ||
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| Note that, for all continuous distributions, the simulated value is modeled | ||
| as the median of the noise distribution; i.e., measurements are assumed to | ||
| be equally likely to lie above or below the model output. | ||
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| The distributions above are for a single data point. | ||
| For a collection :math:`D=\{m_i\}_i` of data points and corresponding | ||
| simulations :math:`Y=\{y_i\}_i` | ||
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