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Fix omniverse tutorial missing lib error #1955

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Merged
KumoLiu merged 2 commits into from
Mar 17, 2025
Merged

Fix omniverse tutorial missing lib error #1955

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97f943c
fix issue
yiheng-wang-nv Mar 17, 2025
7babda9
update docstring
yiheng-wang-nv Mar 17, 2025
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6 changes: 6 additions & 0 deletions modules/omniverse/omniverse_integration.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q \"monai-weekly[nibabel]\"\n",
"!python -c \"import skimage\" || pip install -q scikit-image\n",
"!python -c \"import vtk\" || pip install -q vtk\n",
"!python -c \"import pxr\" || pip install -q usd-core\n",
"!python -c \"import trimesh\" || pip install -q trimesh\n",
Expand Down Expand Up @@ -466,6 +467,11 @@
" print(f\"Saved whole segmentation {all_organ_filename}\")\n",
"\n",
"\n",
"# if workflow.run() is uncommented and run, an image and a label files will be generated in the output folder\n",
"# for example, file paths are like this:\n",
"# f\"{bundle_root}/output/sample_20250317_065034_415537_image.nii.gz\n",
"# f\"{bundle_root}/output/sample_20250317_065034_415537_label.nii.gz\n",
"# then you can replace the \"input_nii_path\" below with the generated label file\n",
"input_nii_path = f\"{bundle_root}/datasets/IntegrationTest-AbdomenCT.nii.gz\"\n",
"output_nii_path = f\"{bundle_root}/datasets/monai/nii\"\n",
"output_obj_path = f\"{bundle_root}/datasets/monai/obj\"\n",
Expand Down