Genomics Aotearoa
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73 repositories
- A workshop to get you started with automating your genomic data analysis work in a High Performance Computing environment
- Material for bioinformatics training programme website
- This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.
- Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.
Introduction-to-R
PublicIntroduction to Rintroduction-to-shell
Publicintroduction to shell- A workflow for analysing RNA-seq data, aimed at new users who want to understand the methods available.
- Code and files for Genomics Aotearoa github.io website. **Now deprecated**
.github
PublicNextflow_Workshop
PublicA workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.visualization_day
PublicVisualisation is more than just the code used to make a plot.Hoiho
Public- A two day workshop on reproducibility with Git and Quarto
hts_workshop_mpi
PublicTraining materials for the 2025 HTS Plant Health and Environment Laboratory workshopIntermediate-R
PublicIntermediate R workshop materialshell-for-bioinformatics
PublicIntermediate-Advanced shell for BioinformaticsHPGP-basics
Public- Training workshop for microbial genome assembly using short sequencing reads.
nesi-jupyter
Public- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
scRNA-seq-data-analysis
PublicVariomeGenomeAssembly
PublicImputation-workshop
Public
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