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@VEuPathDB VEuPathDB Bioinformatics Resource Center

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    351 repositories

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•3•265•35•Updated Apr 22, 2026Apr 22, 2026

    • ApiCommonModel

      Public
      Perl
      •
      Apache License 2.0
      •0•1•0•14•Updated Apr 22, 2026Apr 22, 2026

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•4•0•2•Updated Apr 22, 2026Apr 22, 2026

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •0•1•2•39•Updated Apr 22, 2026Apr 22, 2026

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•3•Updated Apr 22, 2026Apr 22, 2026

    • FgpUtil

      Public
      Java
      •
      Apache License 2.0
      •2•0•2•3•Updated Apr 22, 2026Apr 22, 2026

    • expression-shepherd

      Public
      Wrangling our expression data with gpt-4o
      HTML
      •0•0•1•2•Updated Apr 22, 2026Apr 22, 2026

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•4•9•Updated Apr 22, 2026Apr 22, 2026

    • WDK

      Public
      Java
      •
      Apache License 2.0
      •4•1•14•8•Updated Apr 22, 2026Apr 22, 2026

    • service-eda

      Public
      Repo containing EDA web service
      Java
      •
      Apache License 2.0
      •0•0•25•7•Updated Apr 22, 2026Apr 22, 2026

    • docker-tools

      Public
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • jenkins-website-job-generator

      Public
      Generate Jenkins job configurations for EuPathDB core sites using the job-dsl plugin
      Groovy
      •
      Apache License 2.0
      •0•1•1•0•Updated Apr 21, 2026Apr 21, 2026

    • websiteconf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • dnaseq-nextflow

      Public
      DNASeq Alignments with SNP and CNV nextflow workflow
      Perl
      •
      Apache License 2.0
      •1•1•2•2•Updated Apr 21, 2026Apr 21, 2026

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Apr 21, 2026Apr 21, 2026

    • service-sequence-retrieval

      Public
      REST service for sequence retrieval , reads subsequences from FASTA files using `htsjdk`
      Java
      •
      Apache License 2.0
      •0•0•5•2•Updated Apr 20, 2026Apr 20, 2026

    • dataset-curator

      Public
      This repository contains tools and standard operating procedures (SOPs) for processing new datasets for VEuPathDB resources.
      JavaScript
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • vdi-service

      Public
      VEuPathDB Dataset Installer
      vdi
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•38•0•Updated Apr 17, 2026Apr 17, 2026

    • arba-nextflow

      Public
      Nextflow workflow to generate arba annotations
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • ClinEpiWebsite

      Public
      CSS
      •
      Apache License 2.0
      •0•2•3•1•Updated Apr 16, 2026Apr 16, 2026

    • SiteSearchData

      Public
      WDK Model and other code needed to run a WDK and generate reports to make JSON files to index in solr
      Python
      •
      Apache License 2.0
      •0•1•10•2•Updated Apr 15, 2026Apr 15, 2026

    • TestDatasets

      Public
      Apache License 2.0
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • VdiSchema

      Public
      SQL and scripts to install the VDI control and dataset schemas
      Perl
      •
      Apache License 2.0
      •0•0•1•2•Updated Apr 15, 2026Apr 15, 2026

    • vdi-plugin-wrangler

      Public
      General purpose VDI plugin to process files for EDA loading using the study-wrangler
      R
      •
      Apache License 2.0
      •0•0•13•1•Updated Apr 14, 2026Apr 14, 2026

    • study-wrangler

      Public
      Code to keep study data tidy
      R
      •
      Apache License 2.0
      •0•0•26•2•Updated Apr 14, 2026Apr 14, 2026

    • puppet-ebrc_httpd_setup

      Public
      Puppet module to manage Apache HTTPD per EuPathDB specs
      Perl
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • SolrDeployment

      Public
      XSLT
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • ApiCommonWebService

      Public
      Java
      •
      Apache License 2.0
      •1•0•1•1•Updated Apr 8, 2026Apr 8, 2026

    • EbrcWebsiteCommon

      Public
      Perl
      •
      Apache License 2.0
      •3•3•10•4•Updated Apr 7, 2026Apr 7, 2026

    • OAuth2Server

      Public
      Java
      •
      Apache License 2.0
      •0•0•1•2•Updated Apr 7, 2026Apr 7, 2026
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