Skip to content
Change the repository type filter

All

    Repositories list

    • A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      Apache License 2.0
      0326535Updated Apr 22, 2026Apr 22, 2026
    • Perl
      Apache License 2.0
      01014Updated Apr 22, 2026Apr 22, 2026
    • Perl
      Apache License 2.0
      3402Updated Apr 22, 2026Apr 22, 2026
    • Java
      Apache License 2.0
      01239Updated Apr 22, 2026Apr 22, 2026
    • Perl
      Apache License 2.0
      1003Updated Apr 22, 2026Apr 22, 2026
    • FgpUtil

      Public
      Java
      Apache License 2.0
      2023Updated Apr 22, 2026Apr 22, 2026
    • Wrangling our expression data with gpt-4o
      HTML
      0012Updated Apr 22, 2026Apr 22, 2026
    • Perl
      Apache License 2.0
      1349Updated Apr 22, 2026Apr 22, 2026
    • WDK

      Public
      Java
      Apache License 2.0
      41148Updated Apr 22, 2026Apr 22, 2026
    • Repo containing EDA web service
      Java
      Apache License 2.0
      00257Updated Apr 22, 2026Apr 22, 2026
    • Perl
      Apache License 2.0
      0000Updated Apr 21, 2026Apr 21, 2026
    • Generate Jenkins job configurations for EuPathDB core sites using the job-dsl plugin
      Groovy
      Apache License 2.0
      0110Updated Apr 21, 2026Apr 21, 2026
    • Python
      Apache License 2.0
      0000Updated Apr 21, 2026Apr 21, 2026
    • DNASeq Alignments with SNP and CNV nextflow workflow
      Perl
      Apache License 2.0
      1122Updated Apr 21, 2026Apr 21, 2026
    • HTML
      Apache License 2.0
      6004Updated Apr 21, 2026Apr 21, 2026
    • REST service for sequence retrieval , reads subsequences from FASTA files using `htsjdk`
      Java
      Apache License 2.0
      0052Updated Apr 20, 2026Apr 20, 2026
    • This repository contains tools and standard operating procedures (SOPs) for processing new datasets for VEuPathDB resources.
      JavaScript
      0000Updated Apr 19, 2026Apr 19, 2026
    • VEuPathDB Dataset Installer
      Kotlin
      Apache License 2.0
      00380Updated Apr 17, 2026Apr 17, 2026
    • Nextflow workflow to generate arba annotations
      Perl
      Apache License 2.0
      0000Updated Apr 16, 2026Apr 16, 2026
    • CSS
      Apache License 2.0
      0231Updated Apr 16, 2026Apr 16, 2026
    • WDK Model and other code needed to run a WDK and generate reports to make JSON files to index in solr
      Python
      Apache License 2.0
      01102Updated Apr 15, 2026Apr 15, 2026
    • Apache License 2.0
      0000Updated Apr 15, 2026Apr 15, 2026
    • VdiSchema

      Public
      SQL and scripts to install the VDI control and dataset schemas
      Perl
      Apache License 2.0
      0012Updated Apr 15, 2026Apr 15, 2026
    • General purpose VDI plugin to process files for EDA loading using the study-wrangler
      R
      Apache License 2.0
      00131Updated Apr 14, 2026Apr 14, 2026
    • Code to keep study data tidy
      R
      Apache License 2.0
      00262Updated Apr 14, 2026Apr 14, 2026
    • Puppet module to manage Apache HTTPD per EuPathDB specs
      Perl
      0000Updated Apr 13, 2026Apr 13, 2026
    • XSLT
      Apache License 2.0
      0000Updated Apr 8, 2026Apr 8, 2026
    • Java
      Apache License 2.0
      1011Updated Apr 8, 2026Apr 8, 2026
    • Perl
      Apache License 2.0
      33104Updated Apr 7, 2026Apr 7, 2026
    • Java
      Apache License 2.0
      0012Updated Apr 7, 2026Apr 7, 2026
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.