non-canonical-base-pairs

Here are 3 public repositories matching this topic...

jaswindersingh2 / SPOT-RNA2

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

deep-learning transfer-learning multiple-sequence-alignment rna-secondary-structure canonical-base-pairs pseudoknot-base-pairs lone-pairs direct-coupling-analysis evolutionary-information non-canonical-base-pairs homologous-sequence spot-rna2 base-triples

Updated Apr 3, 2021
Perl

jaswindersingh2 / RNAcmap

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A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

gremlin evolutionary-couplings msa blastn rnafold infernal spot-rna canonical-base-pairs pseudoknot-base-pairs direct-coupling-analysis rna-seconday-structure plmc mf-dca end-to-end-pipeline non-canonical-base-pairs tertiary-interactions rna-contact-prediction

Updated Nov 6, 2023
Python

na-hackathon / na-hackathon-2026

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Collaborative workspace for NA Hackathon 2026 (Prague): nucleic acid structure annotation/validation workflows and RNA prediction (non-Watson–Crick base pairs).

workflow bioinformatics nextflow hackathon structural-biology rna-structure rna mmcif nucleic-acids non-canonical-base-pairs

Updated Feb 12, 2026

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